Make a heatmap of a select number of genes — eda_heatmap • bladdr

Make a heatmap of a select number of genes

Usage

eda_heatmap(dds, genes, stratifier = NULL, assay = 2, ...)

Arguments

dds: a dds object with HGCN symbols as rownames
genes: a character vector containing the names of HGCN symbols to be plotted in the heatmap
stratifier: optional. A character vector specifying a column in colData by which to color samples in the pheatmap.
assay: the assay number that contains normalized counts
...: additional arguments that will be passed to pheatmap

Value

a pheatmap