Function reference • bladdr

Exploratory Data Analysis

Functions for rapid data exploration.

eda_heatmap(): Make a heatmap of a select number of genes

I/O

Functions for file acquisition

get_gbci() get_gbci_file() get_gbci_dir(): Get a directory or file from the GBCI SharePoint

get_pcr(): Get from a raw data folder

list_pcr() list_nanodrop() list_chemidoc() list_licor() list_evos() list_qubit() list_spectramax(): List from a raw data folder

MTT

Functions for analyzing MTTs

mtt: Example data from an MTT

mtt_calc(): Calculate and fit MTT model from absorbance data

mtt_model(): Try to fit a logistic curve to MTT data

mtt_plot(): Plot MTT results

get_ic(): Get the IC value of a fit at a given percent

Utilities

Misc. quality of life functions.

get_gene_expression(): Get expression of gene by indices in a dds

dummy_rna_conc: Example data of RNA samples with concentrations

add_project(): Add a new targets 'project'

dilute(): Calculate dilution from known concentrations

make_pipette_vol(): Round volume to be pipette-compatible

theme_tufte(): ggplot theme in the style of Edward Tufte

evos_flatten(): Flatten an EVOS timelapse directory